rs37796213 SNP Detail

Summary

• ID
  rs37796213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116694469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGAGAAA TCACGGTGTA
  TGCTGTGTGA ACAATTAACT GGGTGACCTT GGGGGAAACC CAGAGGTGTC TGGGAGCCTC
  AGTAACTGTG ACAGAAAGTA CAGAAGAAAT GTAACTATAC CGGTGTTCTC AAAACAGAAA
  AGTGCCCAAG AACCCCGTGA CACGCTCAGC CTCTGAGGCC GGCCCTAGGT GGGCTTTGCC
  R
  GCGTTTACGT TACAACCGAC CTAGCGGATT AAACAGTACT GTGTTTTGGT TTTCCTATCA
  GGCATTCTCT GAAATCTCTT CCTAGTCTGC TCACGTGGGA TGAAAGACAA CAACCAAATG
  AACGGGCAGA TTGGCCAACC CTAATACCAG CAGAAACCTC CACCTAATAC TGTTTCTTTC
  TTTGCTGTTT AATGAGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51859008	NES14881840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37796213					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859008	NES14881840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116694469 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	367 bp proximal
Rr145611	regulatory region 145611	468 bp distal
Rr147146	regulatory region 147146	1133 bp proximal
Tmem72	transmembrane protein 72	526 bp upstream
Tssr62610	transcription start site region 62610	846 bp upstream
Tssr62611	transcription start site region 62611	774 bp upstream
Tssr62612	transcription start site region 62612	738 bp upstream
Tssr62613	transcription start site region 62613	585 bp upstream