rs37798638 SNP Detail

Summary

• ID
  rs37798638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4664193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTTCT TCTAGTCAGT
  CAACCTACTA ACACTTGCAT GTTGTTTCCT TTACCAGCTT CTCAGGTTGA CCCCTAAGTT
  TGAGATGTCC AGAACCCCTC TACTGCTAAA TATCATTATC CTGTTGTCAG TTAATGGACT
  CTACCAAGTA CATCGCACAA GCTCAATACC CCACCCCCTC TCTTCAGAGC CTCAGGGGAC
  W
  TAAGCCTATC ATTTCTGACC TCTAAAGGAA AAAACCTACT AACAGTTAAG AAACCTAACA
  GTACCTATCG GTTAGTTCAA GACCTCAAAT GCACTAATTC TGCAGTGGTA GCCCTCCATC
  CATCCTGTTG TGGCTAACCC TTGCAAACTT ATTTCCACTA TCCCCTCAGG AATTTCCCAT
  TTCTCAGTCC TAGAGCTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51224275	NES14298384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37798638					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51224275	NES14298384	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4664193 () rs orientation: forward

Symbol	Name	Function Class
Gm37323	predicted gene, 37323	within coordinates
Gm39586	predicted gene, 39586	1087 bp upstream