rs37798645 SNP Detail

Summary

• ID
  rs37798645
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69627817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATATTT GTTCATTTAT
  GAATAATAAA TAACTGCCCC TTAGCTATAA CTTTCAAATA TGAACTTCAT GCCCAATCCA
  AAAAGGAAAT CCTCCCACTT CTATTTGATA AGATGAATTC AAATTTAAAC CCTCTTCATT
  GGGGAACAAA GACCCTCTAC TGTCATAGGG TCCTGGAGTC CAATTAGAGT CATTAGCCTA
  M
  ATTGGAATAG TGTGATCCTC TAGATATGCC ACTTGGCTAA AGGCAGGCTT AGTAAGAAAA
  ATTCTTTGCC TCATTTACCT GAATAGTGCC GACGGTTAAT ATGAGTGCAG GAGCCCACAG
  AAGATAGAGG CATCCCCCTG GAGTTGAAGT TATAAGCCAT TCAAAGATGA TAATACGGAT
  GCTGGGTACT GAACTCTAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50978984	NES13929385	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37798645					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978984	NES13929385	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69627817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13262	CpG island 13262	1229 bp proximal
Nmd3	NMD3 ribosome export adaptor	1537 bp upstream
Rr77744	regulatory region 77744	983 bp proximal
Rr397719	regulatory region 397719	1351 bp upstream
Tssr29546	transcription start site region 29546	1512 bp upstream
Tssr29547	transcription start site region 29547	1605 bp upstream