rs37801427 SNP Detail

Summary

• ID
  rs37801427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68730343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTCCCC GCGCGGGGAC
  ACCCTCCCGC GGGCGCCCTC ACGTGGTACA GAGAGCAGCG GGCTCGTCCC CTCCCTATGG
  TTCTGGGTCA AGGCTCAATC TAAAATCAGC CTAGCAAGAA CTTTCCTCAA CAAAAGTAAA
  CCATCCGCAG CCACTCCTGC CCTGGGGGGT TCATGGGCCC TAGGTGGAGT CACTCACTGT
  Y
  TGCAGATTTT CTCAATAGTG TTTCTCTTCA CTATGGCCCT AGAGAAGCAG GGATAACCAG
  CTACATCTTG CTCAGTTCCC TGACAAGCTT CTCTTGTTTG TGGAACGAAA CAATGTATTT
  ATAATTTTTA ATTTAATAAA TAAGTGGAAG AAATACTTAG GTGAAGATTG GGCACAAATG
  GACTTGTCTA GTTATATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50562513	NES14070943	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37801427					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50562513	NES14070943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68730343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20401	CpG island 20401	127 bp distal
Rr664393	regulatory region 664393	1114 bp distal
Rr664394	regulatory region 664394	within coordinates
Rr664395	regulatory region 664395	150 bp distal
Rr664396	regulatory region 664396	1059 bp proximal
Rr664397	regulatory region 664397	1396 bp proximal
Sh2d4a	SH2 domain containing 4A	within coordinates
Tssr77594	transcription start site region 77594	986 bp downstream
Tssr77595	transcription start site region 77595	939 bp downstream
Tssr77596	transcription start site region 77596	876 bp downstream