rs37801840 SNP Detail

Summary

• ID
  rs37801840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66813514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCATCT CAGTTGCTGA
  GATGACTGGT AGATTTGTTC AAATATGCAA CACACTGTGC TTCAACAAAA AACAGTTTAT
  CATGAAACCC CACCCCTGGT GAGGAGCTAA TGAAGGTGTC TCAAGGGGAG GAGGGAGATC
  AGTTTTCAGC AAGGAATGTG CCCCAGGTAG GTTGTTCATG CTCTGGTGGA TAACCCTATA
  Y
  ACTCGCTCAT ACCAGACTCA GTACCAGCAG GGTTTTGTAA TTTAAAACAA ACACACACAT
  GAAGTCAGGA GGGAAGTCTG GGAAGAGCTG AAGGGAAAGA ACTCAGAGTA CATTTGTTCA
  GAAAACATTG TACACATGTA TAAAATTCTC AATGTGGGAG AGACAAGAAA AATCATATGA
  ATGGCTTGCT GGCTATTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51706587	NES14571302	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37801840					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51706587	NES14571302	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66813514 () rs orientation: forward

Symbol	Name	Function Class
Ndrg1	N-myc downstream regulated gene 1	Intron
Rr503612	regulatory region 503612	645 bp distal
Tssr134596	transcription start site region 134596	1436 bp upstream
Tssr134597	transcription start site region 134597	1448 bp downstream