rs37804462 SNP Detail

Summary

• ID
  rs37804462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190547612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCATCAC AACATGATGT
  TACTGGCACT CTGTCCAAAA AAACAGAAAC CAGGAAATGA ACGGCCCAAA GCTACAGCAG
  CAGGAGCAGT AGCTAAAACA CACCATAAAG GCGCCCCTCC TGAAAGACCA GAAGCCAGCC
  CACCTTTGGT CTCCCAGAAG TTCTCTGCTC AGAAATGAAG TTTGAAAAGT CATGTCACCT
  R
  GATACTCAGC TCCAGTCAAG ACGGTCTCGC CTCCTACTCT CGAGAAGCCA CTTTGGTAGC
  AAGTGCATCA GGCTTCTAGG GCTTATGCAC AATATTGTTA AACTTCCTGG GATGGAACCA
  AATCTTCTCT GTGCTAGAAC TTCCAGTTTA ATGAATCACT TTGGAATGAT CAGGCAACCT
  GCAGAGTCCT GCCTGTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51425170	NES14447719	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37804462					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51425170	NES14447719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190547612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70960	predicted gene, 70960			within coordinates
Rps6kc1	ribosomal protein S6 kinase polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr425988	regulatory region 425988			804 bp proximal