rs37805367 SNP Detail

Summary

• ID
  rs37805367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19278865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAATAGTG GTGTTATTCT
  TGTTCCACAA TGATACTTTT ATAAGGTTGC ATCAATAGAG AAATATAACT CAAAGTCAAA
  AATCTAGTGG TGTTTTTTTA ATGCTCCCCT AAATATACAA GAATAGGAAA ACTGTCTTTA
  AAATCTCAGT AATGGTTCTC CTAAAAGAAA AAAAAAAAAA ACTATGTAGA AAATTTGGGG
  R
  CTGATGTGCG TGGTTTCTCA TTGTCAATTA TTAAAACACT TTAGTTAGTG GCTGCATTGA
  TTCGCCATTT TCAAAACAGA TTTTTAATGT ATCTATTTAT ATTTCTCGTT TTGAACCACT
  ATATTCCCTT TAAATGCACG GTTAGTCTGT GGATTCTGTG ACCCAGAGGT GTTTATGTAA
  CTAATGTGAC TATCTGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916972	NES13479836	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37805367					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916972	NES13479836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19278865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	1040 bp proximal
Rr408237	regulatory region 408237	751 bp distal
Rr408238	regulatory region 408238	112 bp proximal
Rr408239	regulatory region 408239	330 bp proximal
Tfap2b	transcription factor AP-2 beta	273 bp upstream
Tssr6030	transcription start site region 6030	299 bp upstream
Tssr6031	transcription start site region 6031	342 bp upstream
Tssr6032	transcription start site region 6032	357 bp upstream
Tssr6033	transcription start site region 6033	373 bp upstream
Tssr6034	transcription start site region 6034	397 bp upstream
Tssr6035	transcription start site region 6035	429 bp upstream
Tssr6036	transcription start site region 6036	453 bp upstream
Tssr6037	transcription start site region 6037	471 bp upstream
Tssr6038	transcription start site region 6038	499 bp upstream
Tssr6039	transcription start site region 6039	514 bp upstream