rs37805778 SNP Detail

Summary

• ID
  rs37805778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCTAGT TTTCTTCCCC
  TAAGTCGTCA AAGTCCTGAA GGGGGACAGT CTTTACAAGC ACATGTTCTG TAATCTGATT
  CAACCTACCC AGTAAACTTG GCGAAGCAAA GTAGAATCAT TATCACAGGA AGCAAAGGCA
  ACCTAAATGT GCAAGCAATA GGAAAATGTG GAAGCCCATC ATAGTACTTG GACTTCATCT
  R
  CTTTTGTGCC TTCACTAAGT TTTTAAACAT GAGCTGGCTC CTATCTGCCA TTGGCAAGGC
  TGGGCACTAC CCACAACCTA CTTCAAGGAC CTCTATACCG TGAGATTACA CACATACATC
  AAAATTTGGG AAAAGTTCTA CCAAGCTGAG AGCTGATCAC CCCACTCTTA GGTGCTTATC
  TCTGTACACC AGAAACCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676632	NES14820457	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37805778					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676632	NES14820457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704382 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1815 bp upstream
Gm68839	predicted gene, 68839	432 bp upstream
Igk	immunoglobulin kappa chain complex	644 bp downstream
Igkc	immunoglobulin kappa constant	644 bp downstream
Rr158	regulatory region 158	1447 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1963 bp downstream
Rr399685	regulatory region 399685	1551 bp downstream
Rr399686	regulatory region 399686	587 bp downstream
Tssr1880	transcription start site region 1880	547 bp downstream
Tssr56956	transcription start site region 56956	1565 bp downstream
Tssr56957	transcription start site region 56957	926 bp downstream
Tssr56958	transcription start site region 56958	910 bp downstream
Tssr56959	transcription start site region 56959	892 bp downstream
Tssr56960	transcription start site region 56960	877 bp downstream
Tssr56961	transcription start site region 56961	861 bp downstream
Tssr56962	transcription start site region 56962	849 bp downstream
Tssr56963	transcription start site region 56963	802 bp downstream
Tssr56964	transcription start site region 56964	791 bp downstream
Tssr56965	transcription start site region 56965	779 bp downstream
Tssr56966	transcription start site region 56966	771 bp downstream
Tssr56967	transcription start site region 56967	751 bp downstream
Tssr56968	transcription start site region 56968	721 bp downstream
Tssr56969	transcription start site region 56969	697 bp downstream
Tssr56970	transcription start site region 56970	678 bp downstream
Tssr56971	transcription start site region 56971	666 bp downstream
Tssr56972	transcription start site region 56972	607 bp downstream
Tssr56973	transcription start site region 56973	596 bp downstream
Tssr56974	transcription start site region 56974	566 bp downstream
Tssr56975	transcription start site region 56975	529 bp downstream
Tssr61321	transcription start site region 61321	889 bp upstream
Tssr61322	transcription start site region 61322	741 bp upstream
Tssr61323	transcription start site region 61323	660 bp upstream
Tssr61324	transcription start site region 61324	583 bp upstream
Tssr61325	transcription start site region 61325	550 bp upstream
Tssr61326	transcription start site region 61326	537 bp upstream
Tssr61327	transcription start site region 61327	511 bp upstream
Tssr61328	transcription start site region 61328	433 bp upstream