GCCGGTGGCA TCGGCTCGGA GTGCCCAGGT TTCACAGTGC AGCTTGTGGC TCGGGTCCAT CTTACAGGTG GCTCTTCCTC CAAATCACGA GGGGGTGGGG TGGGGTGGGA TGGGGAAGTC TTCCTAGGCT TTTAGGAGAT TTCACTCCTC TTTTCCTGTT CAGTGGTCTC TTTGGTCGGC AGGGTGTTCT CCTGCGTCTC R GTTTTCTTCA GCTTGCCCTT ATTGAAGCTG GCGATTTCCC CTATGTCCGG CTTGTCTGCC ATTTTCTTAC AACTCGTGGA TTCTCCTTCC AAGCTTGCGC TCCAGGTGCT CCCACTCTCG TTGCTGCAGC AAGAGACCTT ATTTTGTTTT TCGAGACAGG GTTTCTCTGT GTAGCCCTGG CTGTCCTAGA ACTCACTCTG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50575722 | NES13653320 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | A | G | G | A | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs37813073 | SNP | G | G | G | G | G | G | A | G | G | G | A | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50575722 | NES13653320 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr19:6094790 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi10491 | CpG island 10491 | 1454 bp proximal | ||||||
D530017H19Rik | RIKEN cDNA D530017H19 gene | within coordinates | ||||||
Gm8034 | predicted gene 8034 | within coordinates | ||||||
Gm59262 | predicted gene, 59262 | 1342 bp upstream | ||||||
Rr370438 | regulatory region 370438 | 1548 bp upstream | ||||||
Rr405816 | regulatory region 405816 | 279 bp downstream | ||||||
Rr405817 | regulatory region 405817 | 963 bp upstream | ||||||
Rr543275 | regulatory region 543275 | 320 bp distal | ||||||
Rr543276 | regulatory region 543276 | 456 bp distal | ||||||
Rr543277 | regulatory region 543277 | 1025 bp proximal | ||||||
Rr543278 | regulatory region 543278 | 1299 bp proximal | ||||||
Rr543279 | regulatory region 543279 | 1913 bp proximal | ||||||
Syvn1 | synovial apoptosis inhibitor 1, synoviolin | 1816 bp upstream | ||||||
Tssr154538 | transcription start site region 154538 | 1344 bp upstream | ||||||
Tssr154539 | transcription start site region 154539 | 1869 bp upstream | ||||||
Tssr157816 | transcription start site region 157816 | 130 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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