GGAGTCAGAC CTTGGGATTG CTGCCCTTGT GGGATCGATC GGAAGAGTGA CAACGAGGAT CTGGCCAGGG CGAAGTCAGC TCTCTGCTAA GTGAAGCGGC TCCGCGAGGT CAGATCCTCT GAGCAGGCGT CCCAGGGTCG TGGCGTAGTT TGACCCCGTT TCCAGTTGCT TTGGGGAGGT TGTCCGGATC CTCGGGAATT K GTTTTCTTAA TGGGCCTTAT GCAGGTTTGT TTTGTTTGTT TGTTTGTTTT CGGAATACTT GACTAGGCGG AATCCTTGGG CTAGGCAGGT GAATCCGCCC GAGTTAATTC GGGGCCTCCG TTTTATTCCC TTCAGAAATG CCCGGTGAAG CCACAGAAAC CGTCCCTGCT ACAGAGCAGG AGTTGCCACA GCCTCAGGCT K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50944829 | NES14145739 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs37817494 | SNP | T | T | T | T | T | T | G | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50944829 | NES14145739 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr10:127872222 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2380 | CpG island 2380 | within coordinates | ||||||
Gm66417 | predicted gene, 66417 | 772 bp upstream | ||||||
Naca | nascent polypeptide-associated complex alpha polypeptide | within coordinates | ||||||
Rr224438 | regulatory region 224438 | within coordinates | ||||||
Rr385474 | regulatory region 385474 | within coordinates | ||||||
Tssr96290 | transcription start site region 96290 | 1015 bp downstream | ||||||
Tssr96291 | transcription start site region 96291 | 998 bp downstream | ||||||
Tssr96292 | transcription start site region 96292 | 973 bp downstream | ||||||
Tssr96293 | transcription start site region 96293 | 833 bp downstream | ||||||
Tssr96294 | transcription start site region 96294 | 759 bp downstream | ||||||
Tssr96295 | transcription start site region 96295 | 740 bp downstream | ||||||
Tssr96296 | transcription start site region 96296 | 718 bp downstream | ||||||
Tssr96297 | transcription start site region 96297 | 698 bp downstream | ||||||
Tssr96298 | transcription start site region 96298 | 114 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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