rs37818442 SNP Detail

Summary

• ID
  rs37818442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122834998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTCACC CTCTACTGAC
  CCAGGGAAAA TTATTCCTCA CTGTCACCCA CTTCCCATTC CCTACGGAAT GGAATTCATG
  GGAGGGAAAA ACCAGAAAAA GGAAGCAGCT ATGGAGAGCT TGGAAATGCT GCTGTGCACA
  AACACCTCCC GATGACCTTC ATAATCGAAC ATCATGCATT TCCTGTATCT TAGTACAGTC
  Y
  GCACACTGCA GTTGTACAAA TACTCAGGTG TTGAGTGTCC TCTGCCTCTT CAGTGACTAC
  ATTCAGAAGT GGGGAAAGAG TTGGATGAAC CTGGATGGGC GCCTAAAATT TCAGCACTCG
  AAAGGCTAAG ATGGGAGACC CGTTGGGAGC TCGTGGCTAG CGTGAGATAC ATAGTGGTTT
  TTTATTTATT TGTTTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51196188	NES13816107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37818442					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196188	NES13816107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122834998 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	267 bp downstream
Gm71244	predicted gene, 71244	529 bp upstream
Rr378567	regulatory region 378567	1198 bp upstream
Rr619947	regulatory region 619947	1084 bp distal
Rr619948	regulatory region 619948	1167 bp proximal