rs37820362 SNP Detail

Summary

• ID
  rs37820362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127540973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAGCACA ATTCTGCTCC CCTTCCCCTC AGGTGGGCAG
  ACAGAGGTAG TCCTATCTGA TGCCCATCTC ACCCTCTACC CCGGGTTCCT CCACCTCCCT
  R
  GATGGCCAGG TTGGTCCAGA GACCCTTCTA GTCAGAGGGC TCTCCTGTAG GCCCTTATGC
  CTCCTTGCCC TCCCACCATG ACTTAACTCT TAAGCTGAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947145	NES14150427	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37820362					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947145	NES14150427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127540973 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	66 bp upstream
Rr213603	regulatory region 213603	within coordinates
Rr221966	regulatory region 221966	1472 bp proximal
Tssr3395	transcription start site region 3395	177 bp upstream
Tssr96244	transcription start site region 96244	1587 bp downstream
Tssr96245	transcription start site region 96245	1552 bp downstream
Tssr96246	transcription start site region 96246	1690 bp upstream
Tssr96247	transcription start site region 96247	1708 bp upstream