rs37823454 SNP Detail

Summary

• ID
  rs37823454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91737533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTCTC AGCCATTTGG
  CTTGTGTTTG GACCCTGGAT CCACTCTACA CTAACTACCT GTACACCTTC ACTTAACCTT
  CTAATGCCTG GGTTCCTCCT CTGTAATGTA TATGGAGTCC TCCCCTGCAG CTAGGGGGAT
  CCCATCAGTT CTTACAAAGT GCTCAAAGCC GTGCTTGGCA TATAGGCTGT GTGGATGGTG
  Y
  TGGCCCTCAC TCCTCTGCAC TGACACCCAG AGGGAACAGC TTCTATCTGC CTTTAGATCT
  GCAAATTTCC TCTATTCCAC AGGCCTGGCC CTGTTTCTCT GGACCCCAGA ACCCGTGAAC
  CTACTTTGCC CTGGGTCTTT GCAACTTAGG AGCAACAGCC ACCTCCAGGT AGACTTCCAG
  GCTACCCACT TGGCACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51366815	NES13739576	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37823454					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366815	NES13739576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91737533 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	957 bp downstream
Rr137562	regulatory region 137562	1868 bp proximal
Rr145245	regulatory region 145245	1826 bp proximal
Rr379752	regulatory region 379752	1367 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1489 bp downstream
Tssr57766	transcription start site region 57766	1985 bp downstream
Tssr57767	transcription start site region 57767	1914 bp downstream
Tssr57768	transcription start site region 57768	1904 bp downstream
Tssr57769	transcription start site region 57769	1704 bp downstream
Tssr57770	transcription start site region 57770	1593 bp downstream
Tssr62096	transcription start site region 62096	1918 bp upstream
Tssr62097	transcription start site region 62097	1711 bp upstream