rs37824053 SNP Detail

Summary

• ID
  rs37824053
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128812266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTAAAT GTAACATCTG
  CTTTCTAAGT GGAACTTTCA AGCAAGCCCG AGAGAAAACC ATGTCTATAG ATTAAATATT
  CCTATTCTGA AACCTCCAAG TCTGAAGTGC TTCAAAAATC AACATGAAAA CAGACATGTC
  ACTAGTAGGG AATCCCACAG TTGACCCCAC AAGATGGCCC CAGAATGCAG GTACACTAAA
  S
  ACCTGGCATA AAATCACCTT TAGTCTGTTT CTAAGGTAAG CTTGAAACTA GAGTGAATTC
  CATGGTTTTA TTTCACTCAC AAGACAACCT CATTTGGTAT ACGCAAATAT TTAGATAGCA
  AAAATGATCC AAAAAATCTC AGACAGATGC CAAACATGCT AAAGAAGACA TATCCACTTC
  CCTTTATTTA TTTATTTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843733	NES14705133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37824053					SNP	G	G	G	G	G	G	C	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843733	NES14705133	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128812266 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	158 bp downstream
Cpgi16665	CpG island 16665	646 bp proximal
Gm71554	predicted gene, 71554	150 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	869 bp upstream
Rr621172	regulatory region 621172	886 bp distal
Rr621173	regulatory region 621173	1006 bp distal
Tssr1644	transcription start site region 1644	958 bp upstream
Tssr48983	transcription start site region 48983	884 bp upstream
Tssr48984	transcription start site region 48984	923 bp upstream
Tssr48985	transcription start site region 48985	966 bp upstream
Tssr48986	transcription start site region 48986	1040 bp upstream
Tssr53471	transcription start site region 53471	809 bp downstream