rs37826802 SNP Detail

Summary

• ID
  rs37826802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTATG TATGTATGTA
  TGTATGTATG TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC ATCTATTTCT
  TGTTTACCTA TCACCTGTGT ATCTATTTAT ATATCATCTG CTAGTGTTGG ATATTAGCTT
  CTTGGAGGCC AAGTCGACCA TCTGGAACCC AAAGAAGACT GTGGTCTTAC AGAATCCACA
  Y
  CATAGTTACC AAGGGGATGG TTACAGTGAG TGCAGGACAG GCTGGGGGTG GGTGGGTGGG
  TATGGCCATA GCATTTGAGC CCTGGATCTC AAAGGATAGC CATTATTTGT CTTCAACTCT
  CACTGGATGT TTGACCTTGG GCCTCAGCTT CTCCATACCT CAGATAGCTC ATGTCAAGAG
  AGGAACTAAA GCAAAAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013349	NES15030281	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37826802					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013349	NES15030281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316429 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	278 bp proximal
Rr677906	regulatory region 677906	615 bp proximal
Tssr84785	transcription start site region 84785	1973 bp downstream
Tssr84786	transcription start site region 84786	1942 bp downstream
Tssr84787	transcription start site region 84787	1921 bp downstream
Tssr84788	transcription start site region 84788	1890 bp downstream
Tssr84789	transcription start site region 84789	1863 bp downstream
Tssr84790	transcription start site region 84790	804 bp upstream
Tssr84791	transcription start site region 84791	935 bp upstream
Tssr84792	transcription start site region 84792	983 bp upstream
Tssr84793	transcription start site region 84793	1988 bp upstream