rs37840088 SNP Detail

Summary

• ID
  rs37840088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAAGCA TTTCACTTCT
  TTGAATCCTT TTCTTTTGTG GTGTGGCATC TTGTACATAT TGATCACTGT TTCCATGATC
  TAATAGGCAA CTGATGATAT TTTTGGGACT GGAGGATTTG TGGAGGGGAG ATCTCTTCTC
  GCCTCTCACC TTTGCGCCTT TGCCTTGCAA GTATGAATGA TCTCTTGTCC TCCTGTTTAA
  Y
  GCACGCCACA TGGATTTGTC TTCCCCATTC CCTGAATCTA TAGATGAGGG AGAACACACT
  TTTGAATGGG AGCCCAGGAG CCTGTTGATG TAAAGTGTCT TTTTACCTTT TAAGATTACC
  ATCGTTAGCA CCTCCCTCCT TCCTGGCTGG GTTCCCTGTC ATTTTAAGCA GGCAGCAATT
  ACAGGTTTGC TAAAGAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375347	NES13725660	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37840088					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375347	NES13725660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805014 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	737 bp downstream
Tssr57866	transcription start site region 57866	1084 bp downstream
Tssr57867	transcription start site region 57867	811 bp downstream
Tssr57868	transcription start site region 57868	789 bp downstream
Tssr57869	transcription start site region 57869	751 bp downstream
Tssr57870	transcription start site region 57870	592 bp downstream
Tssr57871	transcription start site region 57871	574 bp downstream
Tssr57872	transcription start site region 57872	186 bp upstream
Tssr57873	transcription start site region 57873	237 bp upstream
Tssr57874	transcription start site region 57874	247 bp upstream
Tssr57875	transcription start site region 57875	264 bp upstream
Tssr57876	transcription start site region 57876	299 bp upstream
Tssr57877	transcription start site region 57877	1207 bp upstream
Tssr57878	transcription start site region 57878	1251 bp upstream
Tssr57879	transcription start site region 57879	1267 bp upstream
Tssr57880	transcription start site region 57880	1320 bp upstream
Tssr57881	transcription start site region 57881	1520 bp upstream
Tssr57882	transcription start site region 57882	1618 bp upstream