rs37841346 SNP Detail

Summary

• ID
  rs37841346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75713341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACAGGGCCTG
  CCTCGACCCT CGAATCCTGC CAGACACCTC CGGTCGGGTG TTAGGGAAAC GCACGAAGTA
  GTCTCAAATA GGAAGGCCAC TTGGACTCTC CTTAGGACAT GCTTTTGTGG GGGAAACTTT
  GAAAACGATA TGAACGCTTA TAAAGACCAA CTTGAGTCTA AACATTTGAA GCTGAAGCTG
  R
  TGCCTGGGTA GTCAGCCCTG AGTACGTGGG GGCTGTGCCT GAATCGAGCC AAAGGCACTC
  AACGGCAGCG GAAGAGAAAC GCTTCCGAGC CAGCCGAACC TGGAAGTCGG CTGCCGCGAC
  CACTCGCTGG TAAGACCACC GTGCTATCAT CTCCTGACAG CCCCTTGGAG GCCCGGCCCG
  CTCCCTCGCC CCGAAGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51719868	NES14560190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37841346					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51719868	NES14560190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75713341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7192	CpG island 7192	within coordinates
Gm62305	predicted gene, 62305	606 bp upstream
Rr390927	regulatory region 390927	1984 bp upstream
Rr404450	regulatory region 404450	389 bp upstream
Rr504550	regulatory region 504550	within coordinates
Rr504551	regulatory region 504551	413 bp proximal
Rr504552	regulatory region 504552	617 bp proximal
Tssr131679	transcription start site region 131679	592 bp upstream
Tssr134873	transcription start site region 134873	415 bp downstream
Tssr134874	transcription start site region 134874	445 bp downstream
Zc3h3	zinc finger CCCH type containing 3	within coordinates