rs37841604 SNP Detail

Summary

• ID
  rs37841604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122035612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGACCAT CTAGGTGGTT
  AAAATGAATC TTTTTGTTTC CTCCCAAGGG CAGTTGAAGA CCTGGTTATC AGGTGTGACT
  TGGGAGAAGC TCCTGGCTCA TCTAGCTTTT CTTTTTCCCT TTAGTCTATG TATGTGAGGA
  GAAGCCAAAG GCCTTGCTTG GCCGTTGCAA TTTTTCCTCT GTGTTGACCA ATGTCCTGGC
  R
  GACTGGATGC TGGGTAGAGC CCACTCAGTG GTACAGACAA AGCCTCCCTA ACAAGAGAAC
  AGACAAATTC CCACAGTTAC AGGACATCTT GAAAGATGTT GCACAGTTAT CTGGGAGTTC
  TATGATCTTG TAGAACAAGG GGGAAGATAT CCTCTGCTTT AATTTCTCTG ACCAGATCAG
  TGTAGGTTTT CAAGTATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51021016	NES13905842	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		A	A	A	A	A
ss135737703	ENSMUSSNP2596745	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37841604					SNP	G	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021016	NES13905842	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122035612 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1141 bp upstream
Rr375675	regulatory region 375675	797 bp upstream
Rr584261	regulatory region 584261	779 bp proximal
Rr584262	regulatory region 584262	1152 bp proximal
Rr584263	regulatory region 584263	1235 bp proximal
Rr584264	regulatory region 584264	1890 bp proximal
Tssr31477	transcription start site region 31477	1140 bp upstream