rs37843539 SNP Detail

Summary

• ID
  rs37843539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:45281678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAATCC TCTAATGGAG
  CCTCCCTAAC ACAATTTGCC ATAGCATGGC TACACCCTCC ACTGGAGCTG AAGTCTCACA
  TTTCAGTGGG TCAGTTTGTT ATCTCTTGAA ATTTAGTTAA TTCTCAGGAC TATTTCTATG
  GCTGGAAAGG CAACATTATT TAATTGTTTT TTTTAATTAA TGCTAAATAG GAATCTCTGA
  R
  GACAGAAAAT AAGTCATAAC TCCTAAGATA CTCGCATTTA GTCTGTGTGT GTTTTGAAAG
  GATCCTTGGA CATGCACTAG CAATCTAGGA TTTGTCAACA AGAGAGCAAA TTTTATTATT
  AGCTTATCAG GCCATTCAAA GCTTTTTTAT TATTATTTTA TTCTCAAGTA GGGAGGGACA
  GCTGCTTCTA AGCCATGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51301007	NES13767455	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37843539					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301007	NES13767455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:45281678 () rs orientation: forward

Symbol	Name	Function Class
6330419E04Rik	RIKEN cDNA 6330419E04 gene	1380 bp upstream
Cntnap2	contactin associated protein-like 2	within coordinates