rs37844062 SNP Detail

Summary

• ID
  rs37844062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101078280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACTGG AATTCCTTTC
  CTGTGGACCA TTCCTCCAGA ATAAGCATGC CTGTGTATGA AGGATAATTT TGTGACGGGC
  TTCTTTCTCT GTGTATGTTT CAAGGCCTCA CATGAGGTAG CATGTACCAG TATTTTGTTC
  CATTGTTTGG ACACTTGAGC TGTTTTTACT TTTGGGCTAT TATAAGGTAT TGAGAGATAA
  Y
  CTCAAATTCA GAAAGATTAT CTCTTTTGCC CCCCCCCCCC CAAAAAAAGG AAAAAAAAAA
  GCTTATTCTA GAGCAGAGGT TCTCAATCTG TAGGCCGTGA CCCCTTTGGG AGTCAAATGA
  CCCTTTCACA TCTGAAATGA AAACACAGAT GTTTACATTT ATGATTCATA ACAGTAGCAA
  AATTACAGTC ATGAAGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss50785715	NES14211420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C		C		C
ss323148496	CHEV_9_101103411	CHEVERUD	SCREENING_POP	f	SNP										T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs37844062					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785715	NES14211420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101078280 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	1867 bp distal
Rr685596	regulatory region 685596	95 bp distal
Tssr91110	transcription start site region 91110	1993 bp upstream