rs37846386 SNP Detail

Summary

• ID
  rs37846386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104897028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTCTTCC TCTTTTAAAA TTTTCATCGG TGTCTAGGTC
  TCTCATGACT TTGCAATCAA CTTTAATGAA GACAACCCGG AGTGTGCAGG TAAGTCATAA
  R
  TGTGCAGAAA GCCAGTGTCT CAGAGTCTGT GACGCTGTGC ACGTTTCCAG GTCCGGCATC
  TCTCTAGTGA GGCACGTGGG TTGTTTGCGT CAAAGCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52038418	NES15056204	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	G	A		G	G		A
ss136905139	ENSMUSSNP57701	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss323172172	CHEV_9_104922159	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs37846386					SNP	A	A	A	A	A	A	A	G	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52038418	NES15056204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104897028 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Tssr86830	transcription start site region 86830	1451 bp downstream
Tssr86831	transcription start site region 86831	1421 bp downstream