rs37847745 SNP Detail

Summary

• ID
  rs37847745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72577299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGGAT CTCTACATAG
  GGAGTTCCAG CCCAGTTAGG GCTACATGTG TAGTGAAACC GTGTGTCTTA AAAAACACGA
  ATCAATAAAA TCAAAGAAAG TAAGTAAATA AAGGAGGAAA GGAAGTAAAA GACTGGGAGA
  AAACAACAAA TCCCAGGTCT TGTGTTGACC GTGCATTCCA GTTTGGTTCT GTGAGGTTCC
  Y
  GGCACACCAA CCTTCCTCCT TTTCTGAGGC TGGTGCTGTG ACCTCTCAGA GTAGCAGCCT
  CTGAGCAGCT CTGCCTGCTC CACCTCCGTT GGCACTCAGA GACCTTGCTT CTTCCAAAGA
  AACCCAGTTC CCTGAACCAC CAGCGTCCCC AGCCCCCACC CTGAGCCTTA TTGCCTTTTC
  TTTCCTCGCT TGCATTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695520	NES14820262	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37847745					SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695520	NES14820262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72577299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17548	CpG island 17548	1346 bp distal
Elmod3	ELMO/CED-12 domain containing 3	1903 bp upstream
Retsat	retinol saturase (all trans retinol 13,14 reductase)	Intron
Rr399707	regulatory region 399707	1686 bp downstream
Rr632239	regulatory region 632239	1985 bp distal
Rr632240	regulatory region 632240	1678 bp distal
Rr632241	regulatory region 632241	1595 bp proximal
Tssr57150	transcription start site region 57150	1707 bp downstream
Tssr61470	transcription start site region 61470	1948 bp upstream
Tssr61471	transcription start site region 61471	1892 bp upstream