rs37848156 SNP Detail

Summary

• ID
  rs37848156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTACTGC AAATATTCTC
  ATATAGTTCC CAGCGGATTT GAAAATGAAT CATCAATTTC TGGTCCTCTT TCTCTATATC
  CTTTACCTGT TTACTGTTTA CGGTTCCAGC TATTAAGATC ATTTGGTTGT ATGTGAGCTG
  GCTTGAGTGT GGGACGTCTG CAGACTGGAT GTGCCCAGGA CTTATCCTGA GAGTACTGAG
  Y
  GGTGCTACAG GCATGAGCAT TTACCTGTAC AGGAGAGCTG CAGTGTGTGG AGGCTAGATA
  AGCACTTATG TTTATTTTGG CTTTTGTGGA GTATTGTGGA ACTTGCTCTG TAGACCAGGC
  TAGCCTCCAA CTCAGAGATT TCCCCTGCCT CTGCCTTCCA AATGCTGGGA TTAAAACCAC
  CACCCACCGG GCTTCATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753219	NES13566150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37848156					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753219	NES13566150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	848 bp distal
Gm41829	predicted gene, 41829	978 bp upstream
Gm59364	predicted gene, 59364	1802 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	543 bp upstream
Tssr155780	transcription start site region 155780	1638 bp downstream
Tssr155781	transcription start site region 155781	1449 bp downstream
Tssr155782	transcription start site region 155782	1436 bp downstream
Tssr155783	transcription start site region 155783	1402 bp downstream
Tssr155784	transcription start site region 155784	990 bp downstream
Tssr155785	transcription start site region 155785	861 bp downstream
Tssr155786	transcription start site region 155786	818 bp downstream
Tssr155787	transcription start site region 155787	713 bp downstream
Tssr158749	transcription start site region 158749	1198 bp upstream