rs37849455 SNP Detail

Summary

• ID
  rs37849455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34923067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCGACA GAGAGCAAAC
  AATAAAGTGG AAGGCAGAGT CACCCTCAAG AAGACGATTA TGTTCTTTTT CTATCCCAAA
  AACCTGATTG TGACATGTCA TTGTGAAATA AACGTTTTGT TCTTTAAAAA TAAGGAAACA
  TTGTTAATTT TATTATATAT ATATAATATA TGCTTATGAA AAACCTAGTT AAATAGTTAC
  Y
  ACCATTGTTC TCAAATCTTA GTCTACTGGT ATATTCTTTC ATTCTTGATT TGTGTGTGTG
  TGTAGAAGAC TGTATATTTA TTCAATATCT ACACGTGAAT ATATATGTAT GTATAAAGCA
  ACTCATATAT TTGTGCGTTT GAAAAGGTTT ATTTATTGAT GTGTTCTATG TATGAGTATT
  TGCCTCCATG TATGTGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50525755	NES14089097	PERLEGEN	MM_PANEL2	f	SNP		C		C	C	C	C	C	T
ss149109291	ENSMUSSNP5806620	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37849455					SNP	T	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50525755	NES14089097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34923067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	211 bp distal
Gm39159	predicted gene, 39159	77 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	1005 bp upstream
Rr400818	regulatory region 400818	284 bp downstream