rs37849888 SNP Detail

Summary

• ID
  rs37849888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60659566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCGCTCT CACAGCTCTA
  CTTCTGCCGC TACTGCAGTG AGCTTCGATC GCTGGAATGT GTGTCGCACG AGGTAACTGG
  GCCGTCCCGC GGGGGACTGC GCGCCGGGGC GGGGGTGCTC ATCCCAGTCA CTGCGGCTGG
  CGGGAAGTTC CGCCGGGAGA GGCGGGGAAA CCGTGTGTCT AGCTTGCTGA CTGGTCAAGT
  R
  CCCCATCATT CAGCTGGCTT TGCGATTTCA TTTGCTTGTG GATAGTCACT TGGAAAAGGG
  GGCGGCCCCG GGTGGGGCTG AGGCTGAACA GATCCTCTTG TTCTAGAGCT GCCTGTAGCT
  GGACGATTTG CCCTGGACCC TGCGGTCTCC TGTGGGACTT GGCGAGTGGA GGGCTGAGAG
  ATCGGAAGTG TCTAGCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418802	NES13463006	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37849888					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418802	NES13463006	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60659566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	within coordinates
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	67 bp upstream
Gm58903	predicted gene, 58903	1928 bp downstream
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	260 bp downstream
Tssr153448	transcription start site region 153448	508 bp upstream
Tssr153449	transcription start site region 153449	415 bp upstream
Tssr153450	transcription start site region 153450	391 bp upstream