rs37852572 SNP Detail

Summary

• ID
  rs37852572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149754305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGTCTT ACTGTACAGA
  AATAGTTGTG TGGACACAGT AGAATGATGT ACACATCCCA GAGACCACAG TATAATCTTT
  TTTAAAAAAA GAAAGAAAGA CCTACAAGTA GAATGTGCCT CTATTCAATG TGGATAAGTT
  ACTTCTCAGC GACATCTGGT AGTAAGTCTG TGTTGATATG ATCCTGTAAC AGAGATTGAA
  Y
  ATTGCTTTGT CAAGAAGGAA GCAAGACATC AAGGCTGGGA GTTGTAAAAC TTACTCCCAA
  TGTGCAGGTA GACAGCTAAA GCTTAGGAGC TAGATTGGGG GACATTGTGA AGACATTGGG
  TGACATTTCC AATGGGAAAG ATGTATGTAA GTTGCTTGTG AGCTCTACCA CTATGTCTAA
  GGCAAAGATG CAGATACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51056676	NES13434277	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	C	T	T	T	C	T	T
ss136077707	ENSMUSSNP2465708	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37852572					SNP	T	T	T	C	T	T	T	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51056676	NES13434277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149754305 () rs orientation: forward

Symbol	Name	Function Class
Rr587358	regulatory region 587358	1900 bp proximal
Tssr32377	transcription start site region 32377	1057 bp upstream