rs37853673 SNP Detail

Summary

• ID
  rs37853673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20179901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCCGA TCCCCCTGTG
  CGAACTGGAT TTCAATCTGA CGCCCACAAA TCCATTTTCT GTCCAAATTA TGTAAAGCGT
  CTTCAGCATC ACGAACATCC TCAAATTGAA CATATACAAA TCCTCTTGGA CGCCGAGTGT
  AGAAATTAAG TGGGACATAA ACAACTACTA TTGGACCATA ACGACCAAAT TCCCGACGTA
  W
  ATCTTCAGAC CTGGTGTCGT CCGCCACGTT CCTGACGAAC AAAGACGTGT TGGGGGGGGG
  GGGGGCGCAG GTATCAGGAC ATGGCGGCGG CGGGACTCTG GGCCGGCGGC GCTAACGAGC
  TCGGGCAAAC CGGCGGCGGC TCACATCCAC TCACATCACA CTCGCACAGA CGCAGAGGGC
  TCCGCTACGG CAACTCCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51078867	NES14360363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37853673					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51078867	NES14360363	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20179901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5307	CpG island 5307	2 bp proximal
Gm5446	predicted gene 5446	within coordinates
Gm60857	predicted gene, 60857	within coordinates
Rr388071	regulatory region 388071	1429 bp upstream