rs37854664 SNP Detail

Summary

• ID
  rs37854664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123800571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGGTCC GCACTTCCTC
  CCGCAGACAG GAAGGTGTAT TACTCAACGT CAACACTGAA GAAACGGTTT TGCTGTCCTG
  TGTGACCTCT GAACTCTCTG GAGAGACAAC GGCAGGCCTG GAACTTTTTA AACTAGATTA
  ATGTCATCAA CTTGAAATTT AATTCAGATC TGATCTAGAA CCTACAACCT AAGGGCAAAG
  R
  AGCAAGATAT TTATTTCAAA GAAGCAGACA ACCTTAGGGG ACCTGTCCTC AGGTTAAAAA
  AGAAAAAAGT GTGCTTTATG TGTCTTAAGG TGTCAGTTTT GCTACAGTTA TGATCCCAGA
  AAATAAGATA TTCCTCTATT GCAGAAAGTG GTCATCCTCT ATGAAGTGCG GTCTGGTCCA
  CATTTGTCTT TTGTGTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51811266	NES14717990	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37854664					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811266	NES14717990	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123800571 () rs orientation: forward

Symbol	Name	Function Class
Clip1	CAP-GLY domain containing linker protein 1	within coordinates
Rr620238	regulatory region 620238	2 bp distal
Rr620239	regulatory region 620239	1072 bp proximal
Tssr48802	transcription start site region 48802	277 bp downstream
Tssr53252	transcription start site region 53252	845 bp upstream
Tssr53253	transcription start site region 53253	818 bp upstream