rs37856356 SNP Detail

Summary

• ID
  rs37856356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60987687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAATTA TAGCACACAT
  ACTCATACAC ATATACAGTT ATTTTTTTCT ACTTCTTTCT ACTTGTTTAC TTTGGAGAAA
  GTTCTAGCAT TACAACAATC ACTAGCCTTG CTGGACTCCT TCTTTGAGGC TCAAGGTGGA
  CCTCTTCCCT GCCCGACTTT CTCAGAGCTC ATGTATTGGA CGCGTCCCTC TTCTCTCTTT
  Y
  CTCAGAACAT CTCCAGCCAT TTATCAGCAC ATGACACAGC AGACCCTCTC TCCCCTAATG
  AGCCCTGTAC TTTCCACTTA GATCAATATC TGCTATGTGC TTGCTAAATA ATGGGCAGCT
  TGAAGACCCA CCACCCAAGT TTCACTCCCT GTAAAGCTTT ATGTGACCAA TTCATTACGA
  CAAGCTCTGT GTTCCAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52025171	NES15041763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37856356					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025171	NES15041763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60987687 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21877	CpG island 21877	1322 bp proximal
Gm34004	predicted gene, 34004	1475 bp upstream
Rr209953	regulatory region 209953	715 bp proximal