rs37857437 SNP Detail

Summary

• ID
  rs37857437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121914560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTTGG GTTTAGAGAG
  GCACACAGAC TCCGATTTAG CCTGATGTTG GCACGAGAGG GTCCAGCTTC TAGGCGCCCC
  TCAGGTACCA CTTTGCAAAG CTGATGTTGG AGACCTGAAT CCTCACAGAG CTGGTTTGCA
  GGCTAAAGTA ACTCTAGAAG ATCCTCCTCC CAGAGTGGTA TGATAAGGTT CCATTTCAGC
  K
  TTAGTTGTGG CCAGGAGACA CAGGCAGACA ATGCAACGGG AGTTGGGGAC AGAGCAAGGG
  ACCATTAGTT AATTAGACTT AATACTCTGA CAGTAATCTT GACTCTATAA GTGAACTTCG
  GAAAAGATGC TGTGGTGGGG GGTGGGGGGT CACGGGGAGG GGGAGAGTAG GTTGGTTGAT
  ACTGGAAAGG GCACGGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51021744	NES13907553	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37857437					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021744	NES13907553	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121914560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Rr397978	regulatory region 397978			1181 bp upstream
Rr584235	regulatory region 584235			1753 bp distal
Rr584236	regulatory region 584236			976 bp distal
Rr584237	regulatory region 584237			956 bp proximal
Rr584238	regulatory region 584238			1272 bp proximal
Rr584239	regulatory region 584239			1500 bp proximal