rs37858299 SNP Detail

Summary

• ID
  rs37858299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACAAAA AAATTAGGCA
  AAACTGTAAA GCTTCTCACC TGGAGAATTC TACTTTTCTG GAGATTCAGT CTTGCCTGCA
  CATACCAGAG TGACACTCCT CCACCTCAGG CCTCCATTTG CCCTCAGCTC AAGTACTCTC
  CATAAAGCAC TTCTAAGTTC TCCTGGACAC CAGACTCCCA GACATTGGGG CTATGCGGAA
  R
  GGTTCACTTC CATGCAAAGA GTCTTCAGCT ATCCCTACAG CACCTCCTTG AGAACTCAGA
  AGTGAGGACA CTCACCGGTG TGTGTGGGTG GCTGGATGGG TGTTGTGGAG AGCTCGAGCC
  GTCGCCGTAA ATGAAGAGGC ATTAGTCCCC AAACCTACTC TTTTCTGTCC TTTGCAGCTT
  AGGAGTTAAT CCTGGTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413768	NES13453162	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37858299					SNP	G	G	G	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413768	NES13453162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327736 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	537 bp distal
Rr356345	regulatory region 356345	within coordinates
Tssr153542	transcription start site region 153542	1534 bp downstream
Tssr153543	transcription start site region 153543	1700 bp downstream
Tssr153544	transcription start site region 153544	1882 bp downstream