rs37859493 SNP Detail

Summary

• ID
  rs37859493
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51729616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCCTTAT TCAAAAGTAA
  TGAAATGGTC ACACTGTGGC AGAAAATATT GTATGCTAAC CTTTAATTTT TGTTGTTGCT
  ATTATTTGGG GTTTGTTATG CATCAATCTG ACAGCAAGGA TTAAAATGTT ACTAATGATT
  CAATGATTCA ATGTCCACTT CTACAAGTCT AGAAGGAATA TTAGCATCCT GGCTCACAGA
  K
  AAAATCTCCA CAAAGTATCA AAGGTGCATC ATAGAAGAGT TACACTAGAA AGCAGTAGCA
  GGGTGTTAAA AAGCAGAAAT AAAACTCTCA AAAGAATTAA GTGGGAGTTA AAACTGTGTG
  GTATTTATAA AGAAAAAATA TCCACTAGCT AATCCTACAA CATACATAGT TTGACAGGAC
  ACTGCCTCTG GAAAGCAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51665626	NES14579650	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37859493					SNP	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665626	NES14579650	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51729616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	533 bp distal
Eif3h	eukaryotic translation initiation factor 3, subunit H	715 bp upstream
Rr311732	regulatory region 311732	215 bp distal
Rr404375	regulatory region 404375	474 bp downstream
Tssr134286	transcription start site region 134286	746 bp upstream
Tssr134287	transcription start site region 134287	703 bp upstream