rs37859984 SNP Detail

Summary

• ID
  rs37859984
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162537075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATGAGT AAAGCTTAAG
  ACAAAAAAGA CATGATAGAG AAAGTCAACT AACTTCTCAA CAACCAATTC TCAACAAGTG
  TACTACAAAG AAAAAAGGAA CTAAGGTAAG TTCCTATGCT TTATGTATTT TGTTTTATAT
  TATATTATCA GATCCTGAAA GATAAGATAT CTATTTCCAA TCCCATATAT GAGGTAAAGT
  M
  TTTTTGGTTT TAGTAGTATT ACCTGCTGAC GCTGAAATCG TGGTGGCAAT GATTTCTGAA
  ACTGTTTGAA ATAGCCAGGT CGAGGTTGAG CCCCCGATTC AGGTTCTGCT TCTTGTACCA
  CTTGTGTGGT CTCCTTTTCA CTGCGATTGC TGTCCTGCCT AGTGAAAATT GGTTCTTCTT
  CTGCTCAAAG AAACAGTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51397208	NES14464326	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37859984					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397208	NES14464326	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162537075 () rs orientation: forward

Symbol	Name	Function Class
Prrc2c	proline-rich coiled-coil 2C	within coordinates
Tssr9722	transcription start site region 9722	839 bp upstream
Tssr14643	transcription start site region 14643	1663 bp upstream
Tssr14644	transcription start site region 14644	82 bp downstream
Tssr14645	transcription start site region 14645	910 bp downstream
Tssr14646	transcription start site region 14646	952 bp downstream
Tssr14647	transcription start site region 14647	996 bp downstream
Tssr14648	transcription start site region 14648	1245 bp downstream