rs37864423 SNP Detail

Summary

• ID
  rs37864423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7460601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGAGGGG ACACAGAATA ATCCAGCAGC TGGCTCTCCG
  AAGTTCCCGG CGACGCCTGT TCGGAAGACT GACTCCGACA GACTGACTGA CTCAGCCGAG
  Y
  TCCGCAGGGA GAGAAGGAGT GCGAGCGCGC ATGCGCACAA AGAGCCTGGA CGCGCGGGCG
  GCGGCCTCGG AGGCGCGCAG CGACGCAATG CGCAGGCGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss50591954	NES13643752	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37864423					SNP	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591954	NES13643752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7460601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	45 bp distal
Rr543686	regulatory region 543686	within coordinates
Rtn3	reticulon 3	within coordinates
Tssr5428	transcription start site region 5428	252 bp upstream
Tssr5429	transcription start site region 5429	168 bp upstream
Tssr5430	transcription start site region 5430	72 bp upstream
Tssr5431	transcription start site region 5431	52 bp downstream
Tssr157986	transcription start site region 157986	895 bp upstream
Tssr157987	transcription start site region 157987	113 bp upstream
Tssr157988	transcription start site region 157988	88 bp upstream
Tssr157989	transcription start site region 157989	26 bp upstream
Tssr157990	transcription start site region 157990	7 bp upstream
Tssr157991	transcription start site region 157991	5 bp downstream