rs37865777 SNP Detail

Summary

• ID
  rs37865777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAAGTA GCCTAGAGGG
  GGCACTCATA GCCTGGGGAA ACAATGATTT GAACCTGCCA GAGACAGGAG CTAGAGTGAT
  GTTTAGCTCA TTTCAACTAG GCAACTCATT GGTCACTAGG TTTACATGAC ACATCATTTG
  TCACTTACGT GCACACTTGT CCCTGCTGGC CTTTGATGAC TCTTGCCCAT GTCTCCCAGG
  Y
  GTAGAGGGGT TGGTAAAAGG CTGTGCATTC TCACAGACTG TGCATTTTGC TCATTTAGAG
  CCCTACTCTG GGGTCTCTAA AATTGGTTTG GAATTTGGAA ATTCCAAATT TGGATTTGAA
  GGCAGCTCAT CATGGTATAT GTAAGTGGGT TTTTGTCATG GTGTAGTCAA AATTCTTAGT
  GTTGTGAAAT AACGCAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50425668	NES13465440	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	T		T
ss325645776	CHEV_18_61953724	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs37865777					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425668	NES13465440	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927141 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	783 bp downstream
Rr346544	regulatory region 346544	941 bp distal
Rr346545	regulatory region 346545	within coordinates
Rr351728	regulatory region 351728	996 bp distal
Rr354902	regulatory region 354902	1741 bp distal
Rr356351	regulatory region 356351	within coordinates