rs37867548 SNP Detail

Summary

• ID
  rs37867548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96356939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATAATAG GTCTCAGAAT
  TGTTTCAAAT AAATAAAAAA ATTACTAATT CTGTTTATTA CATAAAACCA GGAAGAAGTG
  GCCATAATTC AGTCCTGGAA GTATGAAAGG AGACTGCCAA CAATGAGCAG AGTCTGAATT
  TAAATCTTAA GGGGAAAAAA TACTGTTAAT GTGTTGCATA ATAATTCAAA CAAAAGCCAG
  R
  GAGGAAAAAT GTCACAGAGG TGAGAAATGT GTCTTCTGCC CTCCCTTCAT CCCTCCCTCC
  CTCCCTCTCT TTGTGTGTGT GTGTTATGTG TACACTCGCA TGTGTGTTAG GAAGGTTGTT
  GGTTGAGGAG GTAGGCAGAG GCCCGTAAGT GAGCCTTTGG AAATGGCCAA TTACTGGAGG
  AGTTTATTCT TATGAATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51771860	NES14721819	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37867548					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771860	NES14721819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96356939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	883 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	418 bp upstream
Rr367885	regulatory region 367885	871 bp upstream
Rr614891	regulatory region 614891	1910 bp distal
Rr614892	regulatory region 614892	169 bp distal
Rr614893	regulatory region 614893	within coordinates
Rr614894	regulatory region 614894	424 bp proximal
Rr614895	regulatory region 614895	962 bp proximal
Rr614896	regulatory region 614896	1075 bp proximal
Tssr47395	transcription start site region 47395	383 bp upstream
Tssr47396	transcription start site region 47396	664 bp upstream
Tssr47397	transcription start site region 47397	1048 bp upstream
Tssr51962	transcription start site region 51962	925 bp downstream