rs37868829 SNP Detail

Summary

• ID
  rs37868829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:10204329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATCCC AGCATCTGGG
  ACATAGAGGA AGATCTCTCT AGGTTTGAGA GCAGCCTGGT CTACAGACTG AGTTCCAAGA
  CAGCCAGAGC TACACAGAGA AACCTTGTCT CAAAAAAAAA AAAAAAAAAC AAAAAACAAA
  AAAAACAAAA ACCACGGACC CTAAAACAAA GTTATCTAAG GGTAATATGG AAAAGCAGAC
  M
  GGATAGGACC TCTGACCCAT TACTATGGCC TCAGTCCCTG GGCTGACCCA GCTCTGTCCC
  ACTCCAAGTC CATCTCCCAC CTGCTCCCGG CCCTCCTCTC CTAACAGTGT TCTTGGGATC
  CTCCAATAGG TCAAGGTCTC GCACACCCTC TAGTCCCAGC CCACATGACC CTGCATTGTT
  TCATATTCTC ACTTGTTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50603578	NES13642941	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37868829					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50603578	NES13642941	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10204329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10602	CpG island 10602	1539 bp distal
Myrf	myelin regulatory factor	Intron
Rr544042	regulatory region 544042	1728 bp distal
Tssr158169	transcription start site region 158169	1703 bp upstream
Tssr158170	transcription start site region 158170	1806 bp downstream