rs37871934 SNP Detail

Summary

• ID
  rs37871934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75828402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCACCGC CTGTGACAAT
  ACAATGATGC TGCTGACCTC ACCTGTGTGT CTTGAGAAGC AAGTTAAATT CCAAGGCCTT
  CCATCACTCC TAGCTCGCTT ATGCACAGAA AGCCAGTGTC TTCTGATCAT TGTACCTCCC
  GCTCTGGGAA TGGGAAAACA TCACTGGAGG CAGAACAGGG ATGAGGTACC TACTATGTCC
  Y
  ACCAGTACCA GAGGGCTGAG AGTTAGGAGA TCTTTGTCCC CCATACTGAC TCTATTACCA
  GGTCTTGGGC ACAATGCTTC AAATCTCATT TTGCTCACTG GAAAAATGAG CGATACTTCT
  GTCTTTAACT GCTGAAGAGG GAATATAGTG ATGTCAAAAT ACTAGTCTGC ACAGAAACTC
  CAGAACTCCA TGGAGGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50571123	NES14070333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37871934					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50571123	NES14070333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75828402 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	1185 bp downstream
Tssr78063	transcription start site region 78063	1886 bp downstream
Tssr78064	transcription start site region 78064	1825 bp downstream
Tssr78065	transcription start site region 78065	1803 bp downstream
Tssr78066	transcription start site region 78066	1758 bp downstream
Tssr78067	transcription start site region 78067	1725 bp downstream
Tssr78068	transcription start site region 78068	1687 bp downstream
Tssr78069	transcription start site region 78069	1636 bp downstream
Tssr78070	transcription start site region 78070	1591 bp downstream
Tssr78071	transcription start site region 78071	1537 bp downstream
Tssr78072	transcription start site region 78072	1522 bp downstream
Tssr78073	transcription start site region 78073	1452 bp downstream
Tssr78074	transcription start site region 78074	1398 bp downstream
Tssr78075	transcription start site region 78075	1389 bp downstream
Tssr78076	transcription start site region 78076	1344 bp downstream
Tssr78077	transcription start site region 78077	1249 bp downstream
Tssr81820	transcription start site region 81820	1181 bp upstream