rs37872521 SNP Detail

Summary

• ID
  rs37872521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90919379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGTGGGTC GGGCCTCGCG
  TGGGCGCCTA GCACCTCGAG CCAACCCACT CTCGCTTGAA TACGCTCTTT TAACAATGTT
  CTGGTAGCAT GCTCCTGTCG CTGCCCTCTA AAGTCTGGGA ACATGTCACC CAGGACTCGG
  CCCACACTTT ATTAAGCATC TACTACTGCA CGTCACAAGT TTGCACATAC CTAAAAACCA
  Y
  TACTTCCCGT CCACTCTGTA GCTTTGCGGA TGAGTTTGCT CCACCCTCCA CCAAAAATCG
  CACTCTTAAA ATGTCTGCAG CCTAATAAAA AAAAGTTCGT TGTTGCTGAG CGATAAATGC
  TAATGAGACT TTCTCCTATT TAGAGCTGTG TGCCTACATT AAAACTATAG TCCTTTTTTA
  AAGATTTATT CTTGTTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ
ss50888627	NES14226531	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ
rs37872521					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50888627	NES14226531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90919379 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	747 bp upstream
Cpgi2099	CpG island 2099	within coordinates
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	363 bp downstream
Rr436976	regulatory region 436976	1099 bp distal
Rr436977	regulatory region 436977	450 bp distal
Tssr95222	transcription start site region 95222	1414 bp downstream
Tssr95223	transcription start site region 95223	489 bp downstream
Tssr95224	transcription start site region 95224	442 bp downstream
Tssr95225	transcription start site region 95225	414 bp downstream
Tssr98900	transcription start site region 98900	940 bp upstream
Tssr98901	transcription start site region 98901	856 bp upstream
Tssr98902	transcription start site region 98902	817 bp upstream
Tssr98903	transcription start site region 98903	744 bp upstream
Tssr98904	transcription start site region 98904	710 bp upstream