rs37876174 SNP Detail

Summary

• ID
  rs37876174
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52214677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGCACA GACCCAGGGT
  ATCTGTGTTC TCAGTCTGTA CTTAACCACA GGGGTTCTAG GCCTTGACAG ACCTCAGATT
  CATAAGCAAA GGTGAGAAGG AAATCGAACA ATTGAGTTCT AATTCCTAAG GGAACTTTGC
  TAAATCCGGG GAGGGAGGGA GATGGGAGAG TTGGAGCGGG ACTGGGTCAC TGGTTTCACT
  W
  TTATCCCAAG CTTGTTTTCC ACCTCTATTG CCAGCTGGAA ACTGGGTCCC GTGATTTCTT
  TTCCTTAGTT TGTATCCACG CTAAGGCTTA CCCAGCTCTA TTACAATGGT TTTAATTTAA
  AACTTAAGTA GGTAACTGAA AAGCTGTCCT GCCTGACCAG CCTGTTCTCC ATTTCTGCTC
  CCTGCAGTAT CAGGTGCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950455	NES13932097	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37876174					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950455	NES13932097	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52214677 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	409 bp proximal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	77 bp distal
Rr33831	regulatory region 33831	125 bp proximal
Tssr6673	transcription start site region 6673	1858 bp upstream