rs37878459 SNP Detail

Summary

• ID
  rs37878459
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:84043404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCACCAC CAGAGAGCAC
  TGGCTTCAGG GTAAGGCCCT GTGCCCAGTC CCCATTCCCA AAGTTCTGGC AACCAGGACA
  AGACAGGCCC GGCAGTGACT GGTGAGGAAG CTGTGTTTGT TTTACAGGCA GCCTGCGTTG
  TCATTCCGGG TGGCCTTTCC TCAGGAGACA TGTACAAAGA CCTCTCTCTT CCTGTTCTTA
  W
  AATTAGAGTT CCACTCTTAA CACCTCACAT AATCGTGTAT TTCTCCATTT GACTGTGACA
  CTCTCTCACC ATGGAGATCA AACTAACTCA ACTCATGATT TCTCAAGTAC TGAGACTGCA
  AAACTCCCTC GTGAAGGTCC GATTTCCAGA GGGTTGGAGA TTCAACATAT GAATTATGAA
  AGAGTACAGT TCAGTCCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ
ss51568499	NES14672459	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ
rs37878459					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51568499	NES14672459	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84043404 () rs orientation: forward

Symbol	Name	Function Class
Mnd1	meiotic nuclear divisions 1	Intron
Rr578991	regulatory region 578991	61 bp distal
Rr578992	regulatory region 578992	400 bp proximal