rs37879216 SNP Detail

Summary

• ID
  rs37879216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133990190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGAGA GAGAAAGAGA
  GAGAGAGAGA GAGACTCATT TTCTACTTTT GCAAAAGTCC CTAGGAACTA GGTCCAGCAC
  CCCTCAGAGT TGGGAGGGAA TGAAGAAGGA CTAGAGGAAA CAGGAATGTT TCATATTAGT
  GAATTTTACC ACAATTAAAA AAGAAGTCCA AAGACAATCT TCTGGCCCAC GTGTCCAGTC
  Y
  TGCCCAGTTA ACTGAACAAG TTTAGAGCAA CTTCAAGCAC CAGAGACGTC CCCCTAAACT
  TCAGAGCTTT GTGGTCTATT TCCAAAATAG GGCAGACACT AACTTGGAAG TTAAGGAGTG
  ATAGGCAGAA GTACCGAGTG CCTGAGAACT TGGCAGGCAG TCCTACTTTA CAAGCAATTC
  CTTCTCCTTC TTTCCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373636	NES14471702	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37879216					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373636	NES14471702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133990190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	1013 bp distal
Cpgi759	CpG island 759	675 bp proximal
Gm19497	predicted gene, 19497	1505 bp upstream
Gm57140	predicted gene, 57140	716 bp downstream
Rr1740	regulatory region 1740	within coordinates
Tssr8846	transcription start site region 8846	1362 bp downstream
Tssr8847	transcription start site region 8847	1345 bp downstream
Tssr8848	transcription start site region 8848	1302 bp downstream
Tssr8849	transcription start site region 8849	1001 bp upstream
Tssr8850	transcription start site region 8850	1068 bp upstream
Tssr13763	transcription start site region 13763	1637 bp upstream
Tssr13764	transcription start site region 13764	1579 bp upstream
Tssr13765	transcription start site region 13765	1493 bp upstream
Tssr13766	transcription start site region 13766	830 bp downstream
Tssr13767	transcription start site region 13767	863 bp downstream
Tssr13768	transcription start site region 13768	903 bp downstream
Tssr13769	transcription start site region 13769	914 bp downstream