rs37879733 SNP Detail

Summary

• ID
  rs37879733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109683442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCAGATGG GTGGTGACCT CGACTGAGAG GTCACGGGAC
  CCACCTCCTC TCTTGTCACG GATCCAGAGC TGGACTTTGG GAAGCAAAGT CAGGATTATT
  R
  TATCATTCTC TGATGTTTGA GGAGACTCCA AAGACCTCCC CAAAGGATGA CCAATCCAAA
  GCCTGTCTAC AAGATCCTGA TTCTGCCTGC GTGGAGCGGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51052997	NES14374696	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs37879733					SNP	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052997	NES14374696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109683442 () rs orientation: forward

Symbol	Name	Function Class
Gm59461	predicted gene, 59461	1808 bp upstream
Gm60279	predicted gene, 60279	within coordinates
Mir494	microRNA 494	1606 bp downstream
Mir495	microRNA 495	1746 bp upstream
Mir543	microRNA 543	250 bp upstream
Mir666	microRNA 666	77 bp upstream
Mir679	microRNA 679	1358 bp downstream
Mir1193	microRNA 1193	1217 bp downstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc45	microRNA cluster 45, including Mir666 through Mir543	77 bp proximal
Tssr115176	transcription start site region 115176	1811 bp upstream