rs37880349 SNP Detail

Summary

• ID
  rs37880349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110231702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAAGGA GGTGTTATTA
  TCTCTCTTAG TAGATAAGGA AGCTGAACTT CAGAGAGGTG AAGTAACTCA GGCAAGGTCA
  CACAGCGAGT GGTGGAACGT GGCTATGCAC CCAAGTGCTA CAGGCTATTT TGATGCTATG
  AAGACATAGG GAGTAAAATG AGATAATTTT AACCTTTAGA TTCTCAGGCC AGATGTCTCC
  R
  CATGTCTTCT AACTCTGAGG ATGGCGTCAG TAGGTGATTT GCGCCCCACG GTGATTCTGA
  GAGCTTTCCA TGGGAGCTAG TAGGATGGGG AAGGGGAACT GCTCTAGCGC TGAGCTCAAT
  AAGCACAAAG GAAAGAAACA AAGTGAGTTG TGAATTCCTG GTCTTCCTTG GAAGCAAGGA
  TCATAAATCA GGAATGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50455937	NES14118492	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A	A	A	A		G	A	G		G
ss145645200	ENSMUSSNP6955119	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss322397547	CHEV_7_117776009	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37880349					SNP	A	A	G	G	A	A	A	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455937	NES14118492	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110231702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19578	CpG island 19578	1692 bp distal
Gm28863	predicted gene 28863	1598 bp upstream
Rr400547	regulatory region 400547	1987 bp downstream
Rr653272	regulatory region 653272	1783 bp distal
Rr653274	regulatory region 653274	572 bp distal