rs37880865 SNP Detail

Summary

• ID
  rs37880865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAGTTA GGGGAGTGTG
  TGTGTGGGGG GGTAGGGTAT GGGGGACTTT TGGGATAGCA TTTGAAATGT AAATGAAGAA
  AATACCTAAT TTAAAAAAAA AGAAAAGAAA AAAATTTATG AAGTTCCTTG TATTGAAACC
  AAATCTGAAT TTCATGCCAT TTATCCATCA GAATAGGAAG AAATAAGTTT TATTCTCCTT
  R
  ATAGTTTCAC TCATATTAAG GATATGATCC AAGAATGTAT ATATATTTTT TATTTTAGAA
  GAATATTAAC TAAATTCATC AATAAGAGAG TGACTTACGG GTTCCACATC TAAGTATGTC
  CTATGCTCAT CTTCATTTGG ATGTAAGCCT TCAATAGGTT CTGAAACATC TGGACTTGCA
  TGTAGGAAAT GTGGAAGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51687605	NES14753985	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37880865					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687605	NES14753985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000478 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	5 bp upstream
Tssr50147	transcription start site region 50147	95 bp downstream
Tssr50148	transcription start site region 50148	121 bp downstream
Tssr50149	transcription start site region 50149	138 bp downstream
Tssr50150	transcription start site region 50150	191 bp downstream
Tssr50151	transcription start site region 50151	203 bp downstream
Tssr50152	transcription start site region 50152	1507 bp downstream
Tssr50153	transcription start site region 50153	1534 bp downstream
Tssr50154	transcription start site region 50154	1591 bp downstream