rs37882123 SNP Detail

Summary

• ID
  rs37882123
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATCGTT TTGTTTCGTT
  TATACAGATA TGATCATCAT TGAGAGAGTG GGAGAGGGAT TGGTTTCAAA TGGGGTGAGA
  GAGAGAGGGA GGTGGGATAG GCATGTTCGC CCATGAAAAT CCCTTACAGT TTGTACATCA
  CACCTCTTCC TTTGTTGTTT CACTGGAGAT GAAGAATTTG TTTTTTCCCA GATGAAAGTA
  K
  GTAGGCTCCT GGGTTTTGCT TTAAGCAACT AGAGTCAGAC AAAAGAGTTC AGCCAGGAAG
  CTGACCTTCG CTCCCTATCT GTGATCAGAA GGGCTTAAGT AGCCCAGGGC CTGCAGAGAG
  AGACCCAGGG TGGGAAGCAG AATGCTCCTA GAGAGGAGGA AGTGGAAGGT GGCTTCTAGA
  TTTCACTGTG ACCTGTTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533197	NES14628258	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37882123					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533197	NES14628258	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413952 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	1498 bp upstream
Rr404213	regulatory region 404213	170 bp upstream
Rr495436	regulatory region 495436	1107 bp distal
Tssr4478	transcription start site region 4478	1560 bp downstream
Tssr126621	transcription start site region 126621	1534 bp downstream
Tssr126622	transcription start site region 126622	1504 bp downstream
Tssr126623	transcription start site region 126623	77 bp upstream
Tssr126624	transcription start site region 126624	121 bp upstream
Tssr126625	transcription start site region 126625	280 bp upstream
Tssr126626	transcription start site region 126626	295 bp upstream
Tssr126627	transcription start site region 126627	311 bp upstream
Tssr126628	transcription start site region 126628	622 bp upstream
Tssr126629	transcription start site region 126629	1297 bp upstream
Tssr126630	transcription start site region 126630	1336 bp upstream
Tssr129768	transcription start site region 129768	1705 bp upstream
Tssr129769	transcription start site region 129769	68 bp downstream
Tssr129770	transcription start site region 129770	137 bp downstream
Tssr129771	transcription start site region 129771	1889 bp downstream