rs37883158 SNP Detail

Summary

• ID
  rs37883158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84564699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTCAA AGAAAGAAGA
  CGTAGTGTGA GATACATAAG CCCATGACCT GGCCACTCAG GAGAGTTGGA GCTGAGCTTT
  GGGTGTGGAA GCATGTTGTC GCCACCATGG CTCGATGTCC CGTGGGGCTC TAATGGAAAT
  GATCACACTG CTGGACTGTT CTTAGTTTCA GCTAAGCCCT GCACCTGTTG CTTCACCTGC
  Y
  GCCAGGAAAG GGCTCACCTC CCAGCTCTCT GTTTGTTTAT TTCCTTCCTC CGGGTTTCTG
  AACTGTAAGC TTCCCTGACA AGCCCCGCCT ATGGCCCAAG GCTACACTGC TTCCTCCTTT
  CTTTCTCCCT TTTATTTTGG TGTGGGGGTG GAGCCCAGGG ATGTGTCACT GAGTATTATC
  CTACAGCCCC CTGGTAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51563546	NES14676712	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	T	T	T	T	T
ss135427394	ENSMUSSNP8419	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37883158					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51563546	NES14676712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84564699 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	1299 bp distal
Rr68542	regulatory region 68542	702 bp proximal
Rr68543	regulatory region 68543	1502 bp proximal
Rr76452	regulatory region 76452	1593 bp proximal