rs37887236 SNP Detail

Summary

• ID
  rs37887236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5120757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGTTCT TTGAGCCCAG
  CATCCATGGC AAAGGACACA CCAGGACTCC AGGACCTCAA GGGGTGGGTG CTGGGATCTT
  CTCCAATAAA TGGGGTGCCA ACCTCACCCA AAGTTCATCA TCCCCACTGA TGCCTGAGGG
  AAGGGTCTGG GAGGCCTCAG GGGGAAAGGG ACCTTCCATT TATCTAGGTG AGATAAGACC
  S
  CTTTCAGAAA AGATATGCTT CGTAATTTTC AGTGAAATGA GACAGGAGAG GGCAGGGCCT
  TACTTACCCT CTGTTACACA GCAGGCTGAG TGGCCTGGAG GTTTGATAAG GGAGAAAGTC
  CATACTTGTC CCCCACTTTA TTAAAATGCA ACAAAAATCT GGGGGAAGGT CTTGAGGTGA
  GGGTCTCTGA TGAACTGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50580622	NES13651950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37887236					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580622	NES13651950	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5120757 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	89 bp downstream
Cpgi10428	CpG island 10428	1668 bp distal
Cpgi10429	CpG island 10429	798 bp proximal
Cpgi10430	CpG island 10430	1189 bp proximal
Gm46658	predicted gene, 46658	1497 bp upstream
Rr405800	regulatory region 405800	1268 bp upstream
Rr542920	regulatory region 542920	1938 bp distal
Rr542921	regulatory region 542921	1007 bp proximal
Rr542922	regulatory region 542922	1511 bp proximal
Tmem151a	transmembrane protein 151A	102 bp downstream
Tssr154384	transcription start site region 154384	1443 bp downstream
Tssr154385	transcription start site region 154385	1283 bp downstream
Tssr154386	transcription start site region 154386	1024 bp downstream
Tssr154387	transcription start site region 154387	976 bp downstream
Tssr154388	transcription start site region 154388	894 bp downstream
Tssr157540	transcription start site region 157540	1345 bp downstream
Tssr157541	transcription start site region 157541	1380 bp downstream
Tssr157542	transcription start site region 157542	1768 bp downstream