rs37890089 SNP Detail

Summary

• ID
  rs37890089
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCAGAAT CCCCTCTCTC
  TCCGCAGGAT ATCCCATCTC CTGTTTCTTG CCTTAGCTCA TTGGCCATAC TTTTCTATTG
  ACCAGTGATA TTTCCATACA GAACACAAGA GATTCTCTCT GCACCCTCCC TCTTTCCCAG
  GAGACAGAGT GACACCCACA GCCTGCCTAC CATATCTCTG CCTATCTACA TCTACAATGG
  K
  CCTGTCCATC AGCCACAGGG AGAGCTAGTG TTGCCCAGGG AAGGGCCTCA AGAGGCTGTG
  CCACAGCCGT TTGCAACTTA CTGTCCTCTC TGTATCCAAA ACCCTGAACT TCCCCAAGGG
  CCCTGGGTTT GTATAGAGTG GTTGTCAAGA CCCTAGAGCT CGCAGAGAGA ATTGGTGATG
  GGATCTACCA TACCATTAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237436	NES14285398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37890089					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237436	NES14285398	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484346 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	528 bp upstream
Gm28306	predicted gene 28306	535 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Rr15762	regulatory region 15762	1746 bp distal
Tssr6216	transcription start site region 6216	1379 bp downstream
Tssr6217	transcription start site region 6217	361 bp downstream
Tssr6218	transcription start site region 6218	1766 bp upstream