rs37890739 SNP Detail

Summary

• ID
  rs37890739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTTCC TCTCCAGGTC
  TCTGATGCCA CTGGACAGAT GAATCTGACC AAGGTGGCTG ACTCCAGCCC TTTTGCCTCT
  GAACTGCTAA TTCCAGATGA CTGCTTTGTT CTGGACAACG GGCTGTGTGG CAAAATCTAC
  ATCTGGAAGG GTATGTATGG CTCCTCTGTG TGAGCCTGAG GGCACCGCAG CTGCTCTGAA
  Y
  CCAGCGGGCT CAGCCATCTC TGAAAACCTC AGCCCATCTC TATCTCAGAA CTTCAAGGGC
  CTGTTTAGTA TACGGCTGGG CCCATCCCAG ACATTCAGAT TCATCTGGTC TGGCTTGGAG
  CCTGACCACC TGTATATTTA ACATGTTCCC AGGGCTTGCC TGAGGGGCGT TGAGAACTCT
  TGGCCCATGT CCAGGCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51696081	NES14820957	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37890739					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696081	NES14820957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535905 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	1579 bp downstream
Tssr57148	transcription start site region 57148	235 bp downstream
Tssr57149	transcription start site region 57149	66 bp downstream
Tssr61469	transcription start site region 61469	1107 bp upstream